September 23, 2025Access MicrobiologyOpen Access

SNiPgenie: a tool for microbial SNP site detection from whole-genome sequencing data

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SNiPgenie enhances detection of snps, which aids in tracking infection transmission in various bacteria.
The bioinformatics pipeline can analyze multiple microbial genomes simultaneously, improving efficiency.
Users can operate SNiPgenie via a command line or an accessible graphical interface on standard computers.
The tool is developed primarily for mycobacterium bovis but is adaptable to other bacterial species.

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SNiPgenie identifies snps across genomes, supporting antibiotic resistance profiling in mycobacterium bovis.

Farrell et al. (2025) studied this question.

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