Stably encoding phylogenetic trees with folios of leaf addresses

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This method uniquely recovers phylogenetic trees from a stable folio of leaf addresses, enhancing data integration.
The proposed encoding framework reliably maintains tree structures as new branches are added, applicable to various analyses.
Illustrating with Salmonella genome data, this study addresses a significant computational challenge in tracking pathogen evolution.
New addresses for leaves are assigned using a straightforward set of rules, simplifying tree updates in real-time.

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Proposed tree encoding method stabilizes phylogenetic trees in molecular epidemiology, suggesting efficient integration of new sequences.

Tanaka et al. (2025) studied this question.

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