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August 14, 2025Open Access

Deriving longitudinal tumor phylogenies from single-cell sequencing data

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Authors

AJAkhil JakatdarPrinceton UniversityPSPalash SashittalPrinceton UniversityBRBenjamin J. RaphaelPrinceton University

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Implication

Algorithm P hyllochron builds longitudinal phylogenies from tumor cells, indicating rare clones persist through treatment.

Key Points

  • P hyllochron demonstrates improved reconstruction of tumor phylogenies, revealing rare clones missed by prior methods.
  • Active analysis of longitudinal single-cell sequencing data has shown significant support for rare cancer clones.
  • The algorithm employs a unique mathematical formulation of perfect phylogeny, enhancing analytical accuracy.
  • Findings highlight the necessity for robust phylogenetic methods in understanding tumor evolution during treatment.

Cite This Study

Jakatdar et al. (2025) studied this question.

synapsesocial.com/papers/68c23595b210217d647718a1https://doi.org/10.1101/2025.08.06.668977
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